PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0248s0051.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 224aa    MW: 25141.3 Da    PI: 6.5162
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0248s0051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-1780130154
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                          s y GVr ++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+++ +
  Kalax.0248s0051.1.p  80 SSYIGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDTAESAALAYDQAALASR 130
                          6799******.**********44465..**********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-2180140IPR016177DNA-binding domain
CDDcd000185.91E-2780138No hitNo description
PfamPF008474.7E-1280131IPR001471AP2/ERF domain
PROSITE profilePS5103221.27281139IPR001471AP2/ERF domain
SMARTSM003805.7E-3281145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2881140IPR001471AP2/ERF domain
PRINTSPR003671.6E-98293IPR001471AP2/ERF domain
PRINTSPR003671.6E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDSSFPSYFP YPVDNTITTF PSLHQQQQHC LFQFPGQVLP YEDCPSYWNY VRACYVQNNS  60
SPENDFINLD EAVRLGKEQS SYIGVRKRPW GKFAAEIRDS TRNGVRVWLG TFDTAESAAL  120
AYDQAALASR GPMALLNFSE EVVRESLREL RCTVEENGSP VLALKKKHSK KKKRAARVAR  180
RREKIGGGGG DVDDGEMRLS GRDHVLVLED LGADYLEELL SLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2382142363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2382142666ATERF1
3gcc_A2e-2382142666ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589439.11e-49PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC82e-48ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLQ8GZE91e-49Q8GZE9_SOLLC; Ethylene responsive element binding protein
STRINGPGSC0003DMT4000266275e-48(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-25ethylene response factor 1